# Directory specifications
pdbdir=/data/pdb
absoutdir=/data/abs/xml
ab2xml=/usr/local/bin/ab2xml.pl
buildallxml=/usr/local/bin/buildantibodyxml.pl

# Get rid of all built-in SUFFIX rules
.SUFFIXES : 

# Continue after all errors
.IGNORE :

# Source and destination directories
vpath %.ent $(pdbdir)
vpath %.xml $(absoutdir)

# Get a directory listing of all PDB files
sources := $(wildcard $(pdbdir)/*.ent)
# Strip the path
stems1  := $(notdir $(sources))
# Strip the extension
stems   := $(basename $(stems1))
# Add the .xml extension to create list of xml targets
xmltargets := $(addsuffix .xml, $(stems))

# Phony rule to build all the targets
all : xml

xml : $(xmltargets)
	$(buildallxml)

# Build an XML file with antibody data from each PDB file
%.xml : %.ent
	(cd $(absoutdir); $(ab2xml) $< > $(absoutdir)/$@ )