Group
Previous members
Post docs
Antonio Cavallo was a Wellcome Trust funded post doc working on an automated database of single amino acid polymorphisms and their structural effects. (2002-4)
Craig Porter worked on the SAAP project for 6 months (2006)
PhD students
Helen Fooks was a Ph.D. student co-supervised by me and Gail Hutchinson. She was working on pairing preferences in parallel beta-sheets with a view to developing potentials for modelling and threading. (1999-2003)
Gabby Reeves was a Ph.D. student at UCL co-supervised by me and Christine Orengo at UCL. She is working on the CATH database and its application to comparative modelling. (1999-2003)
Alison Cuff was a Ph.D. student working on the p53 database and automated analysis of mutations. (2000-2003)
Martin Blythe was a Ph.D. student based at the Jenner Institute working with Darren Flower and me on prediction of linear B-cell epitopes from primary sequence of protein antigens. He was co-supervised by me while I was at Reading, but is now supervised by Gail Hutchinson (2002-2003)
Danielle Talbot improving alignment for comparative modelling (2001-2006) [Thesis]
Sri Vishnu Vardhan Deevi automated annotation of proteins in the MEP pathway and those targetted to the apicoplast. (2003-2008)
Undergraduate project students
Abigail Collis was a Nuffield Summer Student Bursary holder working on analysing the amino acid distribution in antibody combining sites. (Summer 2000)
Lee Allcorn was an undergraduate project student working on an automatically updated web page of information about antibody structures. (2000-2001)
Adam Brouwer was an undergraduate project student working on analysis of CDR lengths in antibodies. (2000-2001)
Paul Carrodus was an undergraduate project student working on analysis of the p53 data. (2001-2002)
Adam Gregory was an undergraduate project student working on prediction of antigen type from antibody sequence data. (2001-2002)
James Shimmen was an undergraduate project student working on prediction of antigen type from antibody sequence data. (2002-2003)
Gemma Yarham was an undergraduate project student working on analysis of patents in antibody humanization. (2002-2003)
Elliot Brown was an undergraduate project student working with Gail Hutchinson and me on analysis of the SARS genome. (2003-4)
Ken Cheung Analysis of repeated sequences in proteins (2004-5)
Sang Tae Kim Analysis of mutations in OTC (2004-5)
Kenric Leung Looking at mutations in Protein C (2005-6)
Hubert Rogers Looking at compensated mutations (2006-7)
Chok SingWei Analysis of mutant proteins (2006-7)
Michael Eckett Humanness of antibody sequences using IMGT data (2007-8)
Nick Sicard-Askey Glycosylation sites in antibodies (2007-8)
MSc/MRes project students
Luke Kontogiannis was an M.Res. student from York who developed an automated web site summarizing information on serine protease enzyme structures. (2003)
James Allen Analysis of sequence fragments which distinguish human and mouse antibodies (2005)
Adebola Fakoredi Analysis of mutations in phenylalanine hydroxylase. (2006)
Birunthini Yogashangary Antibody sequence database. (2004-6)
Ayodele Babatunde Antibody sequence database. (2004-6)
Kerry White was an M.Res. student from York who worked on an improved method for automatic application of antibody numbering schemes (2007).
Stephen Clayton was an M.Res. student from York who developed a facility for the SAAPdb project to allow users to add their own mutations and examined void sizes (2007).
Brian Kelly was an M.Sc. student from Birkbeck analyzing correlations between CDR-H3 in antibodies and the type of antigen (2007).
Visitors
Veronica Lam and Colin Kwok were visitors from Hong Kong University working on the database of G6PD mutations. (Summer 2000)
Other
James Allen worked on a temporary student basis for 10 weeks to help with the SAAP database (2005)
