News from Andrew Martin's web site http://www.bioinf.org.uk/ Sat, 25 May 2013 03:45:15 +0100 FeedCreator 1.7.2 http://www.bioinf.org.uk/abs/sacs/ Summary of Antibody Crystal Structures updated Andrew Martin Tue, 19 Feb 2013 11:30:00 +0100 http://peds.oxfordjournals.org/cgi/reprint/gzs043?ijkey=VadmYbFUBlVyI3z&keytype=ref Analysis of preferences in antibody germline pairing Andrew Martin Mon, 16 Jul 2012 10:30:00 +0100 http://www.bioinf.org.uk/fosta/ FOSTA data have been updated using the latest UniProtKB/SwissProt release Andrew Martin Mon, 30 Apr 2012 16:00:00 +0100 http://www.bioinf.org.uk/abysis/ Abysis data have been updated resolving some inconsistencies and adding new sequences and structures Andrew Martin Thu, 01 Dec 2011 12:00:00 +0100 http://www.bioinf.org.uk/pdbsws/ PDBSWS data have been updated Andrew Martin Thu, 14 Apr 2011 16:00:00 +0100 http://www.bioinf.org.uk/abs/sacs/ SACS data have been updated and the page is fully functional again Andrew Martin Tue, 08 Feb 2011 17:00:00 +0100 http://www.bioinf.org.uk/software/saptf/ SAPTF has been updated. V1.7 now available for download Andrew Martin Wed, 28 Apr 2010 16:00:00 +0100 http://www.bioinf.org.uk/pdbsws/ PDBSWS has been updated. Owing to various computer problems this is the first update to complete since September 2009 and the data should now be fully consistent Andrew Martin Mon, 22 Mar 2010 17:00:00 +0100 http://www.bioinf.org.uk/publications/ 15.02.10 Our Humanness of Macaque Antibodies paper has been published in JMB. Andrew Martin Mon, 15 Feb 2010 09:00:00 +0100 http://www.bioinf.org.uk/publications/ 15.01.10 Our Compensated Pathogenic Deviation paper has been published in JMB Andrew Martin Fri, 15 Jan 2010 14:00:00 +0100 http://www.bioinf.org.uk/software/saptf/ 17.12.09 We have released SAPTF (Sequence Analysis Plugin Tools Framework) V1.4, an easy way of creating sequence analysis web sites and using AJAX for slow long-running programs. Andrew Martin Thu, 17 Dec 2009 15:00:00 +0100 http://www.bioinf.org.uk/abs/sacs/ 05.11.09 SACS our automated summary of antibody crystal structures has been updated. Andrew Martin Thu, 05 Nov 2009 15:00:00 +0100 http://3DSim.bioinfo.cnio.es/ 01.05.09 A paper on the 3DSim server has been accepted by BMC Bioinformatics. Andrew Martin Fri, 01 May 2009 13:00:00 +0100 http://www.bioinf.org.uk/publications/ 20.04.09 The paper on SAAPdb has been published in Human Mutation. Andrew Martin Mon, 20 Apr 2009 15:00:00 +0100 http://www.bioinf.org.uk/software/profit/ 03.04.09 V3.1 of ProFit Released Andrew Martin Fri, 03 Apr 2009 17:00:00 +0100 http://www.bioinf.org.uk/software/profit/ 27.02.09 V3.0 of ProFit Released Andrew Martin Fri, 27 Feb 2009 16:00:00 +0100 http://www.bioinf.org.uk/abysis/ 09.12.08 Abysis is our new integrated database containing sequences from Kabat, IMGT and PDB as well as structure data from the PDB. It provides a comprehensive point-and-click interface which allows one to search the sequence data on various criteria and display results in different formats. For data from the PDB, sequence searches can be combined with structural constraints. For example, one can ask for all the antibodies with a 10-residue Kabat CDR-L1 with a serine at H23 and an arginine within 10A of H36. Andrew Martin Tue, 09 Dec 2008 12:30:00 +0100 http://www.bioinf.org.uk/publications/ 09.09.08 The paper on the FOSTA database has been accepted for publication in BMC Bioinformatics. Andrew Martin Tue, 09 Sep 2008 15:00:00 +0100 http://www.bioinf.org.uk/publications/ 11.08.08 The paper on SAAPdb has been accepted for publication in Human Mutation. Andrew Martin Mon, 11 Aug 2008 15:00:00 +0100 http://www.bioinf.org.uk/publications/ 02.08.08 The paper on AbNum has been published in Molecular Immunology. Andrew Martin Sat, 02 Aug 2008 15:00:00 +0100 http://www.bioinf.org.uk/impact/ 15.07.08 ImPACT now uses Muscle for alignments. Species similarity data have also been updated. Lisa McMillan Tue, 15 Jul 2008 15:00:00 +0100 http://www.bioinf.org.uk/servers/ 15.07.08 PDBSWS, PDBSprotEC and OMIM data updated. Andrew Martin Tue, 15 Jul 2008 15:00:00 +0100 http://www.bioinf.org.uk/abs/sacs/ 02.07.08 SACS data updated. Andrew Martin Wed, 02 Jul 2008 15:00:00 +0100 http://www.bioinf.org.uk/pdbsprotec 09.05.08 PDBSprotEC now contains many more mappings as EC numbers are now gathered from trEMBL as well as from SwissProt. Links to external servers have also been fixed. Andrew Martin Fri, 09 May 2008 15:00:00 +0100 http://www.bioinf.org.uk/abs/abnum/ 03.03.08 Abnum is a new server which applies Kabat, Chothia, or our enhanced Chothia numbering schemes to an antibody sequence. Andrew Martin Mon, 03 Mar 2008 16:00:00 +0100