Software

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Bioinformatics Software
ProFit Protein least-squares fitting
QTree Space filling pictures using the quad-tree algorithm
MINT A graphical interface to Andrej Sali's Modeller program
NW A pairwise Needleman and Wunsch sequence alignment program
Torsions Calculates backbone torsion angles from a PDB file
AVP Calculates protein void volumes and packing quality
APAT 'Automated Protein Annotation Tool'
SAPTF 'Sequence Analysis Plugin Tool Framework'
Prodoric A command-line wrapper to the PRODORIC web site
BiopTools A set of command-line tools for handling (primarily) protein structure - NEW!
JavaScript
JSAV JavaScript sequence alignment viewer - NEW!
buttons.js Handle buttons on a navigation bar (just click to download)
lastmodified.js Print 'last modified' text (just click to download)
Utilities
QLite A batch queueing system for farms of machines
Cluster A program to perform hierarchical cluster analysis on a set of arbitrary vectors
CDoc A program to generate HTML documentation from C source files
Odds and ends
Mirror A patch for the popular 'mirror' program
Wdiff A patch for the GNU 'wdiff' program to fix a bug under Linux
Programming libraries
BiopLib A library of C routines for general programming and handling protein structure

18 October 2014

Two new pieces of software to help programmers: JSAV, a JavaScript Sequence Alignment Viewer component for web sites; BiopLib, 25 years worth of C code development for handling (mostly) protein structure.

28 November 2014: BiopTools

First full public release of BiopTools, a set of command line tools for manipulating protein strcuture and making use of BiopLib.