# Touch files for Make to know what it's doing
TOUCHDIR  = /home/andrew/pdbcec_ebi/touch
# Dump files directory
DUMPDIR   = /home/andrew/public_html/pdbsprotec

# Data files
ENZYME    = /data/enzyme/release_with_updates/enzyme.dat
SPROTDIR  = /data/swissprot/full
PDBSWSDIR = /data/pdbsws
# Dump files
TXTDUMP  = $(DUMPDIR)/mapping.txt
XMLDUMP  = $(DUMPDIR)/mapping.xml.gz

# The database and username of the person owning the database
DBNAME    = andrew
USER      = andrew
DBHOST    = sapc77

# Programs to run
PROGS     = /home/andrew/pdbcec_ebi
EC2SQL    = $(PROGS)/ec2sql.pl -user=$(USER)
UPDATE    = $(PROGS)/UpdateECFromSprot.pl -dbname=$(DBNAME) -dbhost=$(DBHOST)
GETMAP    = $(PROGS)/getmappings.pl -user=$(USER)
TDUMP     = $(PROGS)/BuildTextDump.pl -dbname=$(DBNAME)
XDUMP     = $(PROGS)/BuildXMLDump.pl -dbname=$(DBNAME)

# Get rid of all built-in SUFFIX rules
.SUFFIXES : 

# Continue after all errors
.IGNORE :

# Obtain the name of the SwissProt database and the PDB/SPROT
# mapping (just in case they decide to change them from 
# 'sprot.dat' and 'pdb_sws_mapping.lst')
SPROT  := $(wildcard $(SPROTDIR)/sprot*.dat)
PDBSWS := $(wildcard $(PDBSWSDIR)/*)

all: $(TOUCHDIR)/enzyme.touch \
     $(TOUCHDIR)/sprot.touch \
     $(TOUCHDIR)/pdbsws.touch \
     $(TXTDUMP) $(XMLDUMP)

$(TOUCHDIR)/enzyme.touch : $(ENZYME)
	$(EC2SQL) -sql $(ENZYME) | psql $(DBNAME)
	touch $(TOUCHDIR)/enzyme.touch

$(TOUCHDIR)/sprot.touch : $(SPROT) $(TOUCHDIR)/enzyme.touch
	$(UPDATE) -sql $(SPROT) | psql $(DBNAME)
	touch $(TOUCHDIR)/sprot.touch

$(TOUCHDIR)/pdbsws.touch : $(PDBSWS)
	$(GETMAP) -sql $(PDBSWS) | psql $(DBNAME)
	touch $(TOUCHDIR)/pdbsws.touch

$(TXTDUMP) : $(TOUCHDIR)/enzyme.touch \
             $(TOUCHDIR)/sprot.touch \
             $(TOUCHDIR)/pdbsws.touch
	$(TDUMP) > $(TXTDUMP)

$(XMLDUMP) : $(TOUCHDIR)/enzyme.touch \
             $(TOUCHDIR)/sprot.touch \
             $(TOUCHDIR)/pdbsws.touch
	(cd $(DUMPDIR); $(XDUMP) > `basename $(XMLDUMP) .gz`)
	(cd $(DUMPDIR); gzip -f `basename $(XMLDUMP) .gz`)