> test sequence
Length of sequence- 12229
Threshold for LDF- 4.00
4 promoter(s) were predicted
Pos.: 1951 LDF- 20.44
Pos.: 10656 LDF- 11.74
Pos.: 929 LDF- 11.74 TATA box predicted at 901
Pos.: 9745 LDF- 8.89
Transcription factor binding sites:
for promoter at position - 1951
1849 (-) S00922 AGAGG
1717 (-) S00922 AGAGG
1886 (+) S00392 AGGAAG
1693 (+) S00880 ATTGG
1900 (-) S01904 CACCTG
1823 (+) S00089 CANYYY
1829 (+) S00089 CANYYY
1893 (-) S00089 CANYYY
1659 (-) S00089 CANYYY
1868 (+) S01051 CCAAGT
1697 (-) S00633 CCAAT
1783 (+) S01003 CCCAG
1806 (-) S01003 CCCAG
1775 (-) S01003 CCCAG
1720 (-) S01003 CCCAG
1670 (-) S01003 CCCAG
1661 (-) S01003 CCCAG
1944 (-) S01187 CCCCGCCC
1943 (-) S00801 CCCGCC
1783 (+) S01936 CCCMNSSS
1944 (-) S01936 CCCMNSSS
1917 (-) S01936 CCCMNSSS
1806 (-) S01936 CCCMNSSS
1790 (-) S01936 CCCMNSSS
1776 (-) S01936 CCCMNSSS
1942 (-) S00802 CCGCCC
1912 (-) S00802 CCGCCC
1948 (-) S00040 CCTGC
1898 (-) S00040 CCTGC
1791 (+) S00230 CCWWWWWWGG
1800 (-) S00230 CCWWWWWWGG
1778 (+) S01622 CWKKANNY
1887 (-) S01622 CWKKANNY
1852 (+) S00973 GAGGC
1859 (-) S00973 GAGGC
1852 (+) S02135 GAGGCC
1859 (-) S02135 GAGGCC
1692 (+) S00780 GATTGG
1681 (-) S01089 GCCAA
1945 (-) S00216 GCCCCGCC
1728 (-) S00437 GGCCG
1938 (+) S00781 GGCGGG
1948 (+) S00781 GGCGGG
1907 (+) S00978 GGGCGG
1937 (+) S00978 GGGCGG
1947 (+) S00978 GGGCGG
1907 (+) S00977 GGGCGGAG
1937 (+) S01984 GGGCGGNNNNGGGCGG
1773 (+) S00974 GGGGC
1787 (+) S00974 GGGGC
1915 (+) S00974 GGGGC
1936 (+) S00974 GGGGC
1941 (+) S00974 GGGGC
1739 (-) S00974 GGGGC
1730 (-) S00974 GGGGC
1936 (+) S00979 GGGGCGGG
1936 (+) S00645 GGGGCGGGGC
1935 (+) S00857 GGGGGCGG
1907 (+) S01193 GGGNGGRR
1937 (+) S01193 GGGNGGRR
1947 (+) S01193 GGGNGGRR
1936 (+) S00064 KGGGCGGRRY
1936 (+) S01542 KRGGCGKRRY
1730 (+) S02023 MAMAG
1852 (-) S02023 MAMAG
1697 (-) S00477 MYWATCWY
1894 (+) S01950 RCAGNTG
1668 (+) S02095 RRRCWWGYYY
1677 (-) S02095 RRRCWWGYYY
1939 (+) S01964 SCGSSSC
1942 (-) S01964 SCGSSSC
1892 (+) S02137 TGGCA
1903 (-) S02137 TGGCA
1667 (+) S01375 TGGGC
1717 (+) S01375 TGGGC
1780 (+) S00250 TGRMCC
1652 (-) S00250 TGRMCC
1842 (+) S00864 TGTCCT
1842 (+) S01042 TGTCCTCT
1715 (+) S02121 WCTGG
1756 (-) S02121 WCTGG
1715 (+) S00487 WCTRG
1837 (-) S00487 WCTRG
1756 (-) S00487 WCTRG
1944 (-) S01081 YYCCGCCC
1914 (-) S01081 YYCCGCCC
for promoter at position - 10656
10386 (+) S01090 AATGA
10563 (+) S01027 ACGCCC
10630 (+) S00922 AGAGG
10357 (-) S00922 AGAGG
10499 (-) S01946 ANATGG
10470 (+) S01904 CACCTG
10556 (+) S01904 CACCTG
10460 (+) S00089 CANYYY
10465 (+) S00089 CANYYY
10482 (+) S00089 CANYYY
10495 (+) S00089 CANYYY
10597 (+) S00089 CANYYY
10615 (+) S00089 CANYYY
10412 (-) S00089 CANYYY
10397 (-) S00089 CANYYY
10542 (+) S01003 CCCAG
10595 (+) S01003 CCCAG
10441 (-) S01003 CCCAG
10364 (-) S01003 CCCAG
10607 (+) S01187 CCCCGCCC
10608 (+) S00801 CCCGCC
10618 (+) S02021 CCCGTC
10458 (+) S01936 CCCMNSSS
10607 (+) S01936 CCCMNSSS
10612 (+) S01936 CCCMNSSS
10613 (+) S01936 CCCMNSSS
10609 (+) S00802 CCGCCC
10623 (+) S00057 CCTGAWWA
10443 (+) S00040 CCTGC
10428 (-) S00040 CCTGC
10356 (+) S00318 CTCTCTGG
10624 (+) S00252 CTGATTA
10559 (+) S01622 CWKKANNY
10582 (+) S01622 CWKKANNY
10421 (+) S00973 GAGGC
10454 (+) S00973 GAGGC
10488 (-) S00973 GAGGC
10454 (+) S02135 GAGGCC
10631 (+) S01909 GAGGTC
10611 (+) S00215 GCCCCACC
10606 (+) S00216 GCCCCGCC
10494 (-) S00437 GGCCG
10613 (-) S00781 GGCGGG
10614 (-) S00978 GGGCGG
10391 (+) S00974 GGGGC
10439 (+) S00974 GGGGC
10615 (-) S00974 GGGGC
10610 (-) S00974 GGGGC
10615 (-) S00979 GGGGCGGG
10615 (-) S00645 GGGGCGGGGC
10619 (-) S01193 GGGNGGRR
10614 (-) S01193 GGGNGGRR
10619 (-) S02016 GGGTGGG
10464 (-) S02016 GGGTGGG
10633 (+) S00742 GGTCC
10423 (+) S01544 GSSWGSCC
10448 (-) S01544 GSSWGSCC
10476 (+) S01425 GTGACTCAG
10476 (+) S00472 GTGACTCAGC
10615 (-) S00064 KGGGCGGRRY
10615 (-) S01542 KRGGCGKRRY
10503 (+) S02023 MAMAG
10471 (+) S01190 RYYWSGTG
10477 (-) S01190 RYYWSGTG
10609 (+) S01964 SCGSSSC
10612 (-) S01964 SCGSSSC
10476 (+) S00143 STGACTMA
10477 (+) S01426 TGACTCA
10477 (+) S01450 TGACTCAGC
10477 (+) S01424 TGANTMA
10483 (-) S01424 TGANTMA
10477 (+) S01935 TGASTMA
10483 (-) S01935 TGASTMA
10550 (+) S00079 TGCRCNC
10653 (-) S00079 TGCRCNC
10449 (-) S02137 TGGCA
10361 (+) S01375 TGGGC
10411 (+) S01375 TGGGC
10496 (-) S01375 TGGGC
10461 (-) S01375 TGGGC
10386 (-) S00250 TGRMCC
10483 (-) S01595 TKAGTCA
10359 (+) S02121 WCTGG
10378 (+) S02121 WCTGG
10436 (+) S02121 WCTGG
10359 (+) S00487 WCTRG
10378 (+) S00487 WCTRG
10436 (+) S00487 WCTRG
10607 (+) S01081 YYCCGCCC
for promoter at position - 929
732 (+) S01904 CACCTG
737 (-) S00051 CAGGTGGC
737 (-) S02128 CAGNTGGC
896 (+) S00089 CANYYY
706 (-) S00089 CANYYY
699 (-) S00089 CANYYY
739 (-) S01003 CCCAG
803 (+) S00801 CCCGCC
847 (+) S00801 CCCGCC
835 (+) S00256 CCCKCCCWCCT
804 (+) S00802 CCGCCC
848 (+) S00802 CCGCCC
856 (+) S00040 CCTGC
777 (+) S01112 CGCCGCG
925 (+) S01112 CGCCGCG
823 (+) S00023 CTGGTCCG
640 (-) S00794 CTTTCC
693 (-) S01089 GCCAA
922 (+) S00437 GGCCG
925 (-) S00437 GGCCG
852 (-) S00781 GGCGGG
808 (-) S00781 GGCGGG
853 (-) S00978 GGGCGG
809 (-) S00978 GGGCGG
752 (+) S00974 GGGGC
810 (-) S00974 GGGGC
810 (-) S00979 GGGGCGGG
810 (-) S00331 GGGGCGGGAC
853 (-) S01193 GGGNGGRR
841 (-) S01193 GGGNGGRR
809 (-) S01193 GGGNGGRR
740 (+) S00742 GGTCC
800 (+) S00742 GGTCC
818 (+) S00742 GGTCC
825 (+) S00742 GGTCC
640 (+) S01544 GSSWGSCC
775 (+) S00608 GTCGCC
910 (+) S00608 GTCGCC
810 (-) S00064 KGGGCGGRRY
810 (-) S01542 KRGGCGKRRY
660 (+) S02023 MAMAG
726 (+) S02023 MAMAG
919 (-) S02023 MAMAG
750 (+) S01964 SCGSSSC
804 (+) S01964 SCGSSSC
924 (+) S01964 SCGSSSC
890 (-) S01964 SCGSSSC
812 (-) S01964 SCGSSSC
784 (-) S01964 SCGSSSC
902 (+) S00087 TATAAA
902 (+) S01540 TATAWAW
690 (+) S02137 TGGCA
722 (+) S01375 TGGGC
745 (-) S00250 TGRMCC
631 (-) S00381 WGATAR
649 (+) S01629 WGNAMCYK
848 (+) S00346 YCSCCMNSSS
897 (-) S02003 YGTCAGC
901 (+) S01989 YTAWAAATAR
802 (+) S01081 YYCCGCCC
846 (+) S01081 YYCCGCCC
for promoter at position - 9745
9476 (+) S00663 AACCCCCC
9683 (+) S01152 AAGTGA
9532 (+) S01153 AARKGA
9683 (+) S01153 AARKGA
9528 (-) S01153 AARKGA
9520 (-) S01153 AARKGA
9455 (+) S01090 AATGA
9680 (+) S00392 AGGAAG
9680 (+) S01769 AGGAAGTGA
9457 (-) S00880 ATTGG
9493 (+) S00089 CANYYY
9501 (+) S00089 CANYYY
9513 (+) S00089 CANYYY
9724 (-) S00089 CANYYY
9687 (-) S00089 CANYYY
9674 (-) S00089 CANYYY
9659 (-) S00089 CANYYY
9623 (-) S00089 CANYYY
9548 (-) S00089 CANYYY
9453 (+) S00633 CCAAT
9481 (+) S01003 CCCAG
9539 (+) S01003 CCCAG
9647 (-) S01003 CCCAG
9656 (-) S00956 CCCCCGCCCC
9655 (-) S01187 CCCCGCCC
9654 (-) S00801 CCCGCC
9637 (-) S00801 CCCGCC
9657 (-) S01936 CCCMNSSS
9656 (-) S01936 CCCMNSSS
9655 (-) S01936 CCCMNSSS
9584 (-) S01936 CCCMNSSS
9653 (-) S00802 CCGCCC
9564 (+) S00040 CCTGC
9588 (+) S00040 CCTGC
9602 (-) S00794 CTTTCC
9483 (+) S01622 CWKKANNY
9627 (+) S01622 CWKKANNY
9645 (-) S01622 CWKKANNY
9608 (-) S01622 CWKKANNY
9626 (-) S00038 GAACAG
9453 (-) S00038 GAACAG
9679 (+) S01502 GAGGAA
9630 (+) S00973 GAGGC
9563 (-) S00973 GAGGC
9632 (+) S00781 GGCGGG
9649 (+) S00781 GGCGGG
9648 (+) S00978 GGGCGG
9647 (+) S00974 GGGGC
9499 (-) S00974 GGGGC
9647 (+) S00979 GGGGCGGG
9647 (+) S00326 GGGGCGGGGG
9646 (+) S00857 GGGGGCGG
9648 (+) S01193 GGGNGGRR
9539 (-) S00742 GGTCC
9652 (+) S01561 GRGSGGTG
9466 (-) S00436 GTCCGT
9672 (-) S01891 GTCTCTCT
9531 (+) S02023 MAMAG
9625 (-) S02023 MAMAG
9529 (-) S02023 MAMAG
9452 (-) S02023 MAMAG
9679 (+) S02024 SAGGAAGY
9653 (-) S01964 SCGSSSC
9605 (-) S00483 TATCTT
9658 (+) S02137 TGGCA
9514 (-) S02000 TKNNGNAAK
9691 (+) S02129 TTCGCAC
9642 (+) S02121 WCTGG
9544 (-) S02121 WCTGG
9642 (+) S00487 WCTRG
9544 (-) S00487 WCTRG
9601 (+) S00381 WGATAR
9698 (+) S01629 WGNAMCYK
9657 (-) S00346 YCSCCMNSSS
9655 (-) S01081 YYCCGCCC
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