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Bioplib
Protein Structure C Library
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Bioplib
Protein Structure C Library
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Header for secondary structure calculation. More...
Go to the source code of this file.
Macros | |
| #define | SECSTR_COIL '-' |
| #define | SECSTR_BEND_START '>' |
| #define | SECSTR_BEND_END '<' |
| #define | SECSTR_BEND_BOTH 'X' |
| #define | SECSTR_BEND 'S' |
| #define | SECSTR_BRIDGE_FWD 'b' |
| #define | SECSTR_BRIDGE_BACKWD 'B' |
| #define | SECSTR_SHEET 'E' |
| #define | SECSTR_SHEET_SMALL 'e' |
| #define | SECSTR_TURN 'T' |
| #define | SECSTR_BREAK '!' |
| #define | SECSTR_BULGE '*' |
| #define | SECSTR_HELIX 'H' |
| #define | SECSTR_HELIX_SMALL 'h' |
| #define | SECSTR_PI 'I' |
| #define | SECSTR_PI_SMALL 'i' |
| #define | SECSTR_3_10 'G' |
| #define | SECSTR_3_10_SMALL 'g' |
| #define | SECSTR_ERR_NOERR 0 |
| #define | SECSTR_ERR_NOMEM (-1) |
Functions | |
| int | blCalcSecStrucPDB (PDB *pdbStart, PDB *pdbStop, BOOL quiet) |
Header for secondary structure calculation.
This code is NOT IN THE PUBLIC DOMAIN, but it may be copied according to the conditions laid out in the accompanying file COPYING.DOC.
The code may be modified as required, but any modifications must be documented so that the person responsible can be identified.
The code may not be sold commercially or included as part of a commercial product except as described in the file COPYING.DOC.
Definition in file secstr.h.
| [in] | *pdbStart | Start of PDB linked list |
| [in] | *pdbStop | End of PDB linked list (NULL or pointer to start of next chain) |
| [in] | verbose | Provide informational messages |
Calculate secondary structure populating the ss field of the PDB structure.
1.8.8
