Table of results for automatic protein check

Results for modeling_eg_1.pdb

List results for one check

Values by residue

For each of the residues in the structure, a search was performed to find 5-residue stretches in the WHAT IF database with superposable C-alpha coordinates. In the following table the RMS distance between the backbone oxygen positions of these matching structures in the database and the position of the backbone oxygen atom in the current residue is given. If the number is larger than 2.0 most matching backbone fragments in the database have the peptide plane flipped. This means you should have a look whether your data can support that alternative as well. It is "normal" that some glycine residues show up in this list, but they are still worth checking!

Values are considered poor if they are larger than 2.00.

Values are considered bad if they are larger than 3.00.

residue	FLPCHK
3-SER	0.38
4-ASP	0.67
5-ALA	0.25
6-ASP	0.23
7-LYS	0.27
8-LYS	0.22
9-ALA	0.28
10-LEU	0.25
11-ASP	0.27
12-ALA	0.28
13-SER	0.42
14-TRP	0.43
15-LYS	0.29
16-LYS	0.28
17-LEU	0.39
18-THR	0.41
19-ALA	0.83
23-GLY	0.78
28-GLY	0.28
29-ILE	0.16
30-ASN	0.30
31-LEU	0.29
32-VAL	0.26
33-LEU	0.26
34-TRP	0.24
35-MET	0.35
36-PHE	0.31
37-ALA	0.44
38-ASN	0.50
40-PRO	0.54
41-ASN	0.47
42-MET	0.51
43-ARG	0.47
45-GLN	0.49
47-SER	0.53
48-LYS	0.81
49-PHE	0.52
51-ALA	0.50
55-ASP	0.38
56-ASP	0.34
57-ALA	0.18
58-LEU	0.30
59-LYS	0.82
60-GLY	0.51
61-ASP	0.65
62-ALA	0.47
63-GLU	0.31
64-PHE	0.24
65-ILE	0.53
66-LYS	0.36
67-GLN	0.21
68-VAL	0.15
69-ASN	0.31
70-VAL	0.27
71-ILE	0.20
72-VAL	0.24
73-ALA	0.29
74-ALA	0.29
75-LEU	0.25
76-ASP	0.29
77-GLY	0.21
78-LEU	0.34
79-LEU	0.36
80-GLN	0.55
81-SER	0.76
83-ASN	0.47
85-PRO	0.46
86-GLY	0.31
87-GLN	0.25
88-LEU	0.27
89-GLN	0.24
90-ALA	0.36
91-ASN	0.43
92-LEU	0.31
93-ASP	0.28
94-LYS	0.27
95-LEU	0.38
96-ALA	1.48
100-VAL	0.61
104-ILE	0.68
105-GLY	1.07
107-GLU	0.57
108-PHE	0.50
109-PHE	0.38
110-GLY	0.29
111-PRO	0.32
112-LEU	0.22
113-GLN	0.21
114-GLN	0.25
115-ASN	0.24
116-ILE	0.15
117-HIS	0.25
118-SER	0.30
119-PHE	0.24
120-ILE	0.20
121-GLU	0.34
122-SER	0.36
123-ALA	0.51
124-LEU	0.71
126-VAL	0.74
127-GLY	1.36
130-SER	0.52
131-ASP	0.38
132-GLU	0.34
133-PRO	0.23
134-LYS	0.30
135-ALA	0.31
136-TRP	0.17
137-GLY	0.38
138-ASN	0.24
139-LEU	0.25
140-ILE	0.16
141-ALA	0.19
142-ALA	0.25

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